RDM and HPC - Challenge or Chance?

The consortium "AG-FDM" within the HPC.nrw-project organizes a regular online-seminar discussing research data management (RDM) strategies in the context of high-performance-computing (HPC). The series will cover specific RDM-solutions for the various scientific disciplines with topics generated through the interest of the participants.

Our next seminar in the series will cover the web-platform "iochem-BD"  on 14th of may 2024, 10 am. Participation is free of charge with no registration is required and access is provided via webex.

Interested participants may register to our mailing list.

Link to the event

Schedule

Date: 14.05.2024
Language: English
Speakers: Carles Bo, Moises Álvarez and Diego Garay

  • 10-10:30 am: Taming Computational Chemistry Data: ioChem-BD and Beyond
    • What is the platform about?
    • Basic architecture, functions and capabilities
    • Overview of related tools and further features
  • 10:30-10:40 am: Time for questions/comments
  • 10:40-11:05 am: Uploading and visualizing data using the web GUI
  • 11:05-11:30 pm: Operating the platform using Linux shell scripts
  • 11:30-12:00 pm: Reusing published data via APIs and Python

Abstract

This talk will introduce the basics and illustrate the main features of ioChem-BD. This web platform has a modular architecture and a user-friendly interface designed to store input and results files generated in computational simulations. It converts raw data and from distinct sources into enriched and unique databases, which allow further advanced data analysis and data reuse. Since we launched the platform in 2015, it has evolved significantly and the code for some modules is distributed open-source. The central node hosted by RES (Spanish Supercomputing Network) and associated storage services are being used by academic researchers worldwide to publish the results from computational projects in open-data form. We will show some examples of how the data in ioChem-BD can be used to optimize resources and to accelerate the computational discovery of new chemical processes and materials design. Finally we will demonstrate how the platform works by using both the web GUI, our own Linux shell client, and the API interface with Python.

Future seminars

The seminar takes place on the second tuesday of each month.
Save the date for our upcoming seminars!

  • 11.06.2024 - "DataLad - an open source distributed management system", Justus Kuhlmann (Uni Münster)
  • 09.07.2024 - "Handling HPC data within the Cluster of Excellence RESOLV", Olaf Kletke, Martin Urban (TU Dortmund)
  • 13.08.2024 - "HPC and RDM", Florian Willems (Uni Köln)
  • 10.09.2024 - "Coscine - storage applications", Katja Jansen, Marcel Nellesen (RWTH Aachen)

Missed the last seminar?

Presentations

Initial Session - Introduction to RDM

Cosine (HPC NRW FDM Seminar Series)

Presentation by Katja Jansen and Kseniia Dukkart

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